Truffle Diversity of the Sierra Nevada Mountains

UC Merced
Stockton, California
BiologyEcology
$2,000
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About This Project

We assembled over 300 truffle collections across the Sierra Nevada with our truffle-hunting dog Booboo. Truffles sustain forests and rely on animals for spore dispersal yet remain poorly studied. In this project, we aim to determine the true diversity and distribution of truffles across the Sierra Nevada. We hypothesize that DNA sequencing will reveal far greater diversity than morphology alone. We will sequence, photograph, and build California’s first truffle field guide.

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What is the context of this research?

We have compiled the largest Sierra Nevada truffle collection to date (over 400 collections), spanning oak savannas to alpine forests across an elevational gradient of more than 8,000 feet. Truffles are vital ectomycorrhizal fungi that form symbioses with trees and depend on mammals for spore dispersal, yet they remain poorly studied because they fruit underground. Previous research has shown that mammal–fungus interactions strongly influence forest ecology and nutrient cycling. However, little is known about how truffle communities vary with elevation or habitat in California. By testing whether DNA sequencing reveals hidden diversity overlooked by morphology, this project will establish a baseline for Sierra Nevada truffle ecology



What is the significance of this project?

Truffles are essential ectomycorrhizal fungi that sustain forest health and food webs, yet California’s truffle diversity remains poorly documented. This project combines field collection, DNA sequencing, and spore photography to characterize truffle biodiversity across the Sierra Nevada. Identifying these species (many of which are undescribed) will clarify fungal distributions, ecological roles, and host associations. By defining the true diversity and elevational patterns of truffles, this work provides a foundation for future research on fungal community responses to climate change, forest management, and habitat disturbance. The resulting open-access sequence database and field guide will serve as critical tools for ecologists, land managers, and citizen scientists seeking to monitor forest health and conserve truffle-associated ecosystems.

What are the goals of the project?

Our goals are to (1) sequence DNA from about 300 Sierra Nevada truffles, (2) identify and describe new species, and (3) combine DNA results with macro and microphotography to produce California’s first comprehensive field guide to truffle fungi.

Budget

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Funds will cover DNA sequencing of ~300 truffle collections at ~$8 per sample. Sequencing is essential to identify species and pair with macro and spore images. We will perform DNA extractions, ITS PCR, and ExoSAP cleanup at UC Merced, then send samples to Eurofins Genomics for Sanger sequencing and data processing.

Project Timeline

DNA sequencing and analysis will occur within 6 months. Species identification and synthesis with photos will follow over 3 months. Drafting and designing the field guide will take 6 months, leading to public release within 1 year.

Jun 01, 2026

DNA sequencing

Sep 01, 2026

Species identification and synthesis with photos

Feb 01, 2027

Drafting and designing the field guide

Meet the Team

Carolin Frank
Carolin Frank
Associate Professor

Affiliates

UC Merced
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Christopher Bivins
Christopher Bivins

Carolin Frank

Carolin Frank is an Associate Professor in the Life & Environmental Sciences Department at UC Merced. Her research focuses on plant–microbe interactions, especially how fungi and bacteria shape forest ecosystems. She has led pioneering studies on nitrogen-fixing endophytes in conifers and has extensive experience mentoring students in microbial ecology, genomics, and forest microbiology.

Christopher Bivins

Christopher is a PhD candidate in Quantitative & Systems Biology at UC Merced, specializing in fungal ecology. His research explores the diversity and ecological roles of fungi in the Sierra Nevada, with a focus on truffles and their interactions with forest ecosystems and small mammals. He combines DNA sequencing, field ecology, and photography to uncover and share the hidden biodiversity of California’s fungi.

Lab Notes

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Additional Information

Unique to this project is a trained truffle dog (named Booboo), enabling efficient sampling. Each specimen has detailed habitat notes, macro photos, and spore micrographs. These data, paired with sequencing, create a rare integrated dataset for science and outreach.


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