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Using new underwater technologies to improve reef science and management of a belittled Brazilian coral oasis

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Ended on 9/04/24
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About This Project

We will use new image-based technology and integrate it to our historical data gathered since 2000 to enhance our coral reef population monitoring program. This will guide current management efforts in a neglected coral oasis in Southeastern Brazil. This initiative is crucial since these reefs are under intense local impacts. The new methodology promises insights into coral health that our current methods have not yet provided.

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What is the context of this research?

In the 1960s, Jacques Laborel called Búzios (Rio de Janeiro) a "coral oasis" due to its high coral cover, supporting rich marine life and vital ecological services. However, the area has been largely overlooked by the coral reef community. Since Laborel's study, Búzios' population has skyrocketed from 2,500 to 40,000, leading to a heavily urbanized coastline and significant pressure on its coral habitats.

We have monitored these reefs since 2000, gathering health and demographic data through visual census. These efforts provide the only historical baseline for determining coral health. However, our recent assessments show the visual method's shortcomings, mainly its inability to correlate health data with increases in other organisms. This could be addressed using an image-based approach.

What is the significance of this project?

Búzios supports a rich marine life that provides income for artisanal fishing families and tourism workers.
Our project collaborates with local authorities to provide guidelines that will manage activities around the reefs. However, without an image-based approach to gain a more comprehensive view of the benthic community, thorough assessments are impossible.

The orthomosaic images built from photos taken underwater will allow us to estimate the dynamics of corals in relation to competitors (such as zoanthids and cyanobacteria - see video below), which cannot be directly assessed by our current visual census estimates. Also, the photos provide an unbiased permanent record of the reef conditions that allows future comparisons.

What are the goals of the project?

Our main goal is to enhance monitoring of Búzios' coral habitats with a new reef assessment tool. This includes i) conducting a field expedition to compare the traditional visual census (measuring individual colonies with tapes) with orthomosaics created by underwater photos; ii) calibrating measurements from both methods to rescale our historical data from 2000, 2008, 2016 and 2024 which covers more than 4,500 colonies; iii) using the new method to improve our existing coral health analysis based on colony size and other demographic parameters (e.g. tissue mortality); iv) utilizing orthomosaics to estimate coral growth/decline compared to other reef organisms in future assessments; v) creating underwater maps to guide reef management by local enforcement partners.

Budget

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The monitoring project has not been funded since 2019, which hinders further fieldwork expeditions. However it has been funded in the past so the SCUBA equipment and basic fieldwork material are still available. The university will provide the vehicle for transportation.

The Canon G7x camera and its waterproof housing are the key equipement to make the underwater orthomosaic. The prices include importing fees and taxes from May 2024.

Since Buzios is 170km from our base university, we need to arrange accommodation for the team, which comprises three people for three days (one for arrival and two days during fieldwork). Average fees for estimated period.

Although all sites are coastal, some of the studies sites are not easily accessed from the shore, especially when carrying equipment. Therefore we need a boat. Prices were based on previous fieldworks. Each fielwork day costs approximately $300 in May/June 2024.

Endorsed by

This study is crucial for Brazilian marine biodiversity, as it covers areas dominated by corals under significant anthropogenic pressure. Due to limited resources for marine ecology research in Brazil, it is essential to secure alternative funding. The support will allow the methodology to be updated, enabling the creation of orthomosaics, a technique that provides accurate estimates of benthic cover. The proposing team is highly qualified, with extensive knowledge of the region's corals and the methodology applied

Project Timeline

We will conduct a fieldwork expedition to execute both methods and provide the comparative data. The images need to be processed using software to produce seascape visualization. Then, the maps are generated and demographic (size, mortality etc) from colonies can be extracted. The data will be used to evaluate our historical datasets and reef health. Finally, information on the other reef organisms in the orthomosaics will constitute a baseline for future assessments of community dynamics.

Aug 05, 2024

Project Launched

Sep 30, 2024

Travel to Buzios for fieldwork

Jan 31, 2025

Data processing and production of orthomosaics

Feb 28, 2025

Final underwater maps of study sites for science and management

Mar 31, 2025

Analysis of demographic data from orthomosaics and comparisons to historical visual census data

Meet the Team

Lelis Antonio Carlos Junior
Lelis Antonio Carlos Junior
PhD in Ecology and Evolution

Affiliates

Pontificial Catholic University of Rio de Janeiro
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Lelis Antonio Carlos Junior

I hold a undergraduate degree in Biological Sciences (2009) from the Federal University of Minas Gerais (UFMG, Brazil). I completed my Master's and PhD in Ecology and Evolution at the State University of Rio de Janeiro (UERJ) in 2013 and 2017, respectively, focusing on benthic dynamics with a sandwich period at the University of Liverpool, UK.

I have devoloped my reef monitoring skills during two postdoctoral jobs at the departments of Zoology and Ecology of the Federal University of Rio de Janeiro (UFRJ 2017-2022). During this time, I investigated the temporal dynamics and health status of coral populations in the Armação dos Búzios region. Later, I studied the spatiotemporal patterns of reef environments in the largest reef system in the Southwestern Atlantic, the Abrolhos Bank, in Bahia state.

My primary research interest lies in exploring spatial and temporal variation patterns in sessile benthic marine communities, particularly corals. Since 2022 I serve as a full-time lecturer in the Department of Biology at PUC-Rio, teaching Invertebrate Zoology, Ecology, and Marine Biology.

I am a passioante diver and an amateur but entusiast hiker. When I'm not in the field, I bike to work daily and spend the rest of my time tackling statistical challenges.

Lab Notes

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Additional Information

The proponent has a previous experience with the orthomosaic technology from a recent postdoc job in reef monitoring elsewhere.

Now, as a newly hired lecturer, he aims to establish this protocol in Búzios to enhance regional monitoring and support management actions. This idea was triggered by the apparent recent expansion of other competitive organisms, such as Palythoa caribeorum, growing over reef-building corals (see video below). However, without a historical baseline for community-wide assessments, we cannot assert about the decline of corals in relation to other organisms in the area. This is mainly what we are trying to correct in this proposal. Also, other key ecological aspects, such as habitat complexity could also be inferred using the image-based approach. Finally, orthomosaics provide a viable alternative that will also provide a permanent record of reef condition.

The project, started by partners in 2000, lost funding in 2019, and since then, self-funding has kept the monitoring going. Implementing orthomosaics would optimize fieldwork duration, crucial given our limited funds, and improve prospects for securing new funding opportunities.

Therefore, if approved, this proposal showcases how emerging technologies can deliver on their promised benefits by optimizing reef science and conservation efforts in underdeveloped regions of the world.



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