Lab Note 3: Introduction to the Pathogens
Of the known disease threats to muskrats, bacteria represent one of the more studied and recorded groups (Ganoe et al. 2020). We are focusing our study on two bacteria, Francisella tularensis and Clostridium piliforme, because of their significance to muskrats in past literature over the last century relative to other infectious agents. Francisella tularensis is gram-negative bacteria and is the causative agent of the disease referred to as tularemia. Francisella tularensis is a zoonotic pathogen meaning it can cause disease in both humans and animals. It is very transmissible and can be spread through most major transmission pathways (vector borne, ingestion, inhalation, or direct contact with contaminated objects, food, water, etc.) In fact, it is so infectious that it is classified as a category A bioterrorism agent by the National Institute of Health https://www.ncbi.nlm.nih.gov/books/NBK22924/.

Francisella tularensis is typically maintained and amplified across the landscape within rodents and lagomorphs (rabbits) and to some capacity in arthropod vectors like ticks (Kugeler et al. 2009) (Telford and Goethert 2020) (Mani et al. 2015). They are referred to as reservoir/amplification hosts because they help the pathogen exist and spread. Although rodents can act as reservoirs, they are also susceptible and can succumb to infection with F. tularensis depending on the host species infected. Tularemia has been reported in muskrats over the course of the last century and is known to have occurred as epizootics, temporary but widespread disease in population, in muskrats of Canada and the US (Ganoe et al. 2020).

Clostridium piliforme is another gram-negative bacterial pathogen that displays the capacity to infect a wide array of animals from rodents and ruminants to non-human primates and even birds (Garcia et al. 2022) (Brooks et al. 2006) (Ikegami et al. 1999) (Neto et al. 2015) (Raymond et al. 2001) (Sasseville et al. 2007). Infection has also been documented in one human who was co-infected with HIV-1 (Smith et al. 1996). In such cases where C. piliforme infection develops into disease, it is referred to as Tyzzer’s disease. Muskrats of North America have had well documented epizootic outbreaks of Tyzzer's disease (Ganoe et al. 2020). Like other bacteria in the genus Clostridium, C. piliforme can produce spores during non-favorable environmental conditions, prolonging their stability in the environment and increasing the odds a host may encounter viable bacteria. It is that environmental stability that fuels the prevailing theory of transmission, where the hosts uptake bacterial spores primarily via ingestion. Once in the host, the bacteria colonize the gastrointestinal tract and can enter circulation in more severe cases.
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