Sequencing the Black Rhinoceros Genome

Backed by Pembient, DNAnexus, Greg Simmons, Catherine Simmons, Andrew Kenyon, Tom Lyon, Vladimir Voevodsky, Jay Jensen, Dr. Elizabeth Iorns, Denny Luan, and 171 other backers
University of Washington
Brooklyn, New York
BiologyEcology
Open Access
DOI: 10.18258/5332
$17,292
Raised
104%
Funded on 7/11/15
Successfully Funded
  • $17,292
    pledged
  • 104%
    funded
  • Funded
    on 7/11/15

About This Project

We are sequencing the genome of a beautiful black rhino. Her name is Ntombi, and she is one of only 5,055 black rhinos alive in the world. Three out of eight original subspecies have been poached to extinction and the remaining five subspecies are critically endangered. With Ntombi's genome sequence we will be able to advance scientists' understanding of this endangered species that has played a critical role in our ecosystem for over 50 million years.

Ask the Scientists

Join The Discussion

What is the context of this research?

Scientists have yet to sequence the black rhino genome. Because of advances in sequencing technology, the costs for sequencing have dropped dramatically. Having the black rhino genome will allow conservationists to gain insight into the dynamics of this endangered species.

Genome sequencing is already being used to combat the loss of biodiversity. Scientists have used the same methods for conservation efforts around the Crested Ibis bird and Northern White Rhino.

With the genome of the black rhino we will be able to answer the following questions. How did the black rhino evolve into a subspecies? What loci in the black rhino genome show a susceptibility to disease?

What is the significance of this project?

Sequencing the black rhino genome is just the first step. The data from this project will be used to create a biobank of genomic data for the remaining 8 subspecies of black rhino. Three are already extinct. We intend to use this project as a catalyst to sequence all subspecies of black rhino and understand the genetic divergence within and between rhino species.

This will be a foundation that future researcher can utilize and could possibly help bring the three currently extinct black rhinoceros subspecies back into existence.

What are the goals of the project?

The first step is to obtain a raw sequence for the black rhino and align the sequence to the existing southern white rhino genome. The second step is to produce a fully annotated version of the black rhino genome.

The data produced from this project will be open access and we intend to publish the findings in a peer reviewed journal.

Budget

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$15,000 will fund the materials and operating costs to obtain the raw sequence for the black rhino. This sequence will be aligned to the existing white rhino genome that we already have access to. The findings will be shared with the public. Conservationists, biologists, historians, etc. will be able to access the sequence for free and continue this important work in the field.

Meet the Team

Chuck Murry
Chuck Murry
Jay Shendure
Jay Shendure
New Harvest
New Harvest
Pembient
Pembient
Ntombi The Rhino
Ntombi The Rhino

Team Bio

Dr. Charles (Chuck) Murry is a Professor of Pathology, Bioengineering and Cardiology. He is Director of the Center for Cardiovascular Biology and Co-Director at the Institute for Stem Cell and Regenerative Medicine.

During his travels to Africa, Murry was lucky enough to see rhinos in the wild. It was an experience which took his breath away. He's so incredibly excited to be involved in a conservation genomics project that can be accomplished with existing technologies, and completed in such a short timeline.

Murry is a native of North Dakota. He got his MD and PhD degrees from Duke University in 1989 and 1988, respectively. His PhD thesis focused on mechanisms of cell injury during myocardial ischemia and reperfusion, and included the first description of the phenomenon of ischemic preconditioning.

In 1989 he moved to Seattle for residency training in Anatomical Pathology at the University of Washington. In 1991 he began subspecialty clinical training in diagnostic cardiovascular pathology, and also began postdoctoral training in the laboratory of Dr. Steve Schwartz. There, he worked on the molecular basis for monoclonality in human atherosclerosis. While in the Schwartz lab, Murry became interested in strategies to induce myocardial infarcts to heal by muscle regeneration, which led to his current work in myocardial infarct repair and stem cell biology.

Ntombi The Rhino

My name is Ntombi. I am a Black Rhino. My human friends @UWMedicine and @Pembient are trying to sequence my genome.

When I grow up I want to be a scientist.

Additional Information

Pictures of Ntombi!!!














Chuck, and Chuck in the lab






Project Backers

  • 181Backers
  • 104%Funded
  • $17,292Total Donations
  • $82.36Average Donation
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